FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12110-RB through 18771 annotations produced 1 hits

/// Phospholipase D (CG5815 /// Pld):

Annotation Number : CG12110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033075
Gbrowse : chr2R:2129528-2142771 (+) // 100.0 //
Probeset : 1627315_s_at
Accessions : protein= NP_001137610; /// NP_523627; /// NP_724469; /// NP_724470; /// NP_724471; /// NP_724472;, nucleotide= NM_001144138; /// NM_078903; /// NM_165469; /// NM_165470; /// NM_165471; /// NM_165472;
Pathway : 0031410 // cytoplasmic vesicle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004630 // phospholipase D activity // inferred
FlyMine data for FBgn0033075.
BDGP gene expression has embryonic in situ data for Pld: 7 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0033075 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033075 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 4	4 of 4	0.30	Down
Head	42 ± 1	3 of 4	0.40	Down
Eye	25 ± 2	4 of 4	0.21	Down
Thoracicoabdominal ganglion	52 ± 1	4 of 4	0.40	Down
Salivary gland	110 ± 9	4 of 4	0.92	None
Crop	77 ± 3	4 of 4	0.60	Down
Midgut	404 ± 15	4 of 4	3.40	Up
Tubule	222 ± 14	4 of 4	1.90	Up
Hindgut	128 ± 6	4 of 4	1.10	None
Heart	41 ± 2	4 of 4	0.34	Down
Fat body	68 ± 7	4 of 4	0.57	Down
Ovary	387 ± 5	4 of 4	3.20	Up
Testis	12 ± 1	0 of 4	0.10	Down
Male accessory glands	80 ± 6	4 of 4	0.70	Down
Virgin spermatheca	88 ± 4	4 of 4	0.74	Down
Mated spermatheca	87 ± 3	4 of 4	0.73	Down
Adult carcass	59 ± 5	3 of 4	0.50	Down
Larval CNS	72 ± 8	4 of 4	0.61	Down
Larval Salivary gland	253 ± 12	4 of 4	2.11	Up
Larval midgut	465 ± 26	4 of 4	3.88	Up
Larval tubule	452 ± 7	4 of 4	3.80	Up
Larval hindgut	199 ± 13	4 of 4	1.66	Up
Larval fat body	93 ± 12	3 of 4	0.80	None
Larval trachea	109 ± 2	4 of 4	0.92	None
Larval carcass	104 ± 5	4 of 4	0.87	None
S2 cells (growing)	142 ± 3	4 of 4	1.19	None
Whole fly	119 ± 7	4 of 4

Looking for CG12110-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720