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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12113-RA through 18771 annotations produced 1 hits



lethal (1) G0095 (l(1)G0095):

Annotation Number : CG12113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026679
Gbrowse : chrX:8449275-8452794 (-) // 100.0 //
Probeset : 1629198_at
Accessions : protein= NP_572488;, nucleotide= NM_132260;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0026679.
VDRC has 2 RNAi stocks for FBgn0026679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 0.90None
Head28 ± 14 of 4 0.60Down
Eye41 ± 24 of 4 0.88None
Thoracicoabdominal ganglion29 ± 24 of 4 0.60Down
Salivary gland65 ± 84 of 4 1.40None
Crop43 ± 44 of 4 0.90None
Midgut33 ± 04 of 4 0.70None
Tubule27 ± 14 of 4 0.60Down
Hindgut39 ± 24 of 4 0.80None
Heart31 ± 14 of 4 0.67Down
Fat body37 ± 44 of 4 0.80None
Ovary81 ± 34 of 4 1.80Up
Testis10 ± 13 of 4 0.20Down
Male accessory glands71 ± 24 of 4 1.50Up
Virgin spermatheca30 ± 24 of 4 0.64Down
Mated spermatheca29 ± 14 of 4 0.63Down
Adult carcass41 ± 24 of 4 0.90None
Larval CNS56 ± 44 of 4 1.21None
Larval Salivary gland60 ± 34 of 4 1.30Up
Larval midgut34 ± 44 of 4 0.75None
Larval tubule37 ± 14 of 4 0.80None
Larval hindgut38 ± 34 of 4 0.82None
Larval fat body28 ± 34 of 4 0.60Down
Larval trachea61 ± 84 of 4 1.32None
Larval carcass51 ± 24 of 4 1.10None
S2 cells (growing)75 ± 34 of 4 1.61Up
Whole fly46 ± 44 of 4

Looking for CG12113-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime