FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12117-RA through 18771 annotations produced 1 hits

sepiapterin reductase (Sptr):

Annotation Number : CG12117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014032
Gbrowse : chrX:8357337-8359030 (-) // 100.0 //
Probeset : 1632179_at
Accessions : protein= NP_727265;, nucleotide= NM_167157;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004757 // sepiapterin reductase activity // in
FlyMine data for FBgn0014032.
BDGP gene expression has embryonic in situ data for Sptr: 4 pix of staining in 1 body parts.
Homophila reports that CG12117 is a close match (1e-26) to human gene SPR (NP_003115), a gene associated with Sepiapterin reductase deficiency (3).
TRiP has 1 RNAi stocks for FBgn0014032 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014032 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	118 ± 4	4 of 4	0.80	Down
Head	196 ± 6	4 of 4	1.30	Up
Eye	212 ± 12	4 of 4	1.41	Up
Thoracicoabdominal ganglion	102 ± 3	4 of 4	0.70	Down
Salivary gland	503 ± 10	4 of 4	3.35	Up
Crop	539 ± 21	4 of 4	3.60	Up
Midgut	127 ± 4	4 of 4	0.90	Down
Tubule	110 ± 28	4 of 4	0.70	None
Hindgut	422 ± 14	4 of 4	2.80	Up
Heart	78 ± 2	4 of 4	0.52	Down
Fat body	95 ± 30	4 of 4	0.63	Down
Ovary	215 ± 6	4 of 4	1.40	Up
Testis	31 ± 0	4 of 4	0.20	Down
Male accessory glands	118 ± 7	4 of 4	0.80	Down
Virgin spermatheca	203 ± 17	4 of 4	1.35	Up
Mated spermatheca	178 ± 11	4 of 4	1.19	None
Adult carcass	166 ± 8	4 of 4	1.10	None
Larval CNS	120 ± 10	4 of 4	0.80	Down
Larval Salivary gland	174 ± 13	4 of 4	1.16	None
Larval midgut	42 ± 2	4 of 4	0.28	Down
Larval tubule	40 ± 2	4 of 4	0.30	Down
Larval hindgut	175 ± 5	4 of 4	1.16	Up
Larval fat body	34 ± 2	4 of 4	0.20	Down
Larval trachea	259 ± 13	4 of 4	1.72	Up
Larval carcass	250 ± 3	4 of 4	1.66	Up
S2 cells (growing)	54 ± 3	4 of 4	0.36	Down
Whole fly	150 ± 6	4 of 4

Looking for CG12117-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720