Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12132-RA through 18771 annotations produced 1 hits



c11.1 (c11.1):

Annotation Number : CG12132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040236
Gbrowse : chrX:9169682-9177132 (-) // 100.0 //
Probeset : 1639771_at
Accessions : protein= NP_652606;, nucleotide= NM_144349;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0040236.
BDGP gene expression has embryonic in situ data for c11.1: 4 pix of staining in 1 body parts.
BioGrid reports that CG12132 interacts with CG5984 .
VDRC has 3 RNAi stocks for FBgn0040236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 ± 84 of 4 1.30None
Head91 ± 34 of 4 0.80None
Eye198 ± 164 of 4 1.81Up
Thoracicoabdominal ganglion114 ± 114 of 4 1.00None
Salivary gland266 ± 374 of 4 2.43Up
Crop233 ± 64 of 4 2.10Up
Midgut145 ± 24 of 4 1.30Up
Tubule373 ± 244 of 4 3.40Up
Hindgut161 ± 94 of 4 1.50Up
Heart389 ± 204 of 4 3.55Up
Fat body114 ± 264 of 4 1.04None
Ovary207 ± 94 of 4 1.90Up
Testis26 ± 24 of 4 0.20Down
Male accessory glands116 ± 24 of 4 1.10None
Virgin spermatheca92 ± 94 of 4 0.84None
Mated spermatheca133 ± 104 of 4 1.21None
Adult carcass94 ± 74 of 4 0.90None
Larval CNS85 ± 44 of 4 0.78Down
Larval Salivary gland264 ± 104 of 4 2.41Up
Larval midgut223 ± 114 of 4 2.03Up
Larval tubule681 ± 234 of 4 6.20Up
Larval hindgut200 ± 64 of 4 1.82Up
Larval fat body164 ± 74 of 4 1.50Up
Larval trachea227 ± 344 of 4 2.08Up
Larval carcass154 ± 44 of 4 1.40Up
S2 cells (growing)216 ± 104 of 4 1.97Up
Whole fly109 ± 64 of 4

Looking for CG12132-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime