Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12135-RA through 18771 annotations produced 1 hits



c12.1 (c12.1):

Annotation Number : CG12135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040235
Gbrowse : chrX:9211946-9213277 (-) // 100.0 //
Probeset : 1627616_at
Accessions : protein= NP_652605;, nucleotide= NM_144348;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from electronic annotation /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0040235.
BDGP gene expression has embryonic in situ data for c12.1: 9 pix of staining in 17 body parts.
BioGrid reports that CG12135 interacts with CG4755 .
TRiP has 1 RNAi stocks for FBgn0040235 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 24 of 4 1.00None
Head113 54 of 4 0.80Down
Eye106 14 of 4 0.78Down
Thoracicoabdominal ganglion104 74 of 4 0.80Down
Salivary gland136 174 of 4 1.00None
Crop118 44 of 4 0.90None
Midgut118 24 of 4 0.90None
Tubule71 14 of 4 0.50Down
Hindgut119 24 of 4 0.90None
Heart68 44 of 4 0.50Down
Fat body124 94 of 4 0.91None
Ovary194 74 of 4 1.40Up
Testis61 54 of 4 0.50Down
Male accessory glands171 44 of 4 1.30Up
Virgin spermatheca99 14 of 4 0.73Down
Mated spermatheca99 84 of 4 0.73Down
Adult carcass89 74 of 4 0.70Down
Larval CNS206 184 of 4 1.51Up
Larval Salivary gland153 74 of 4 1.12None
Larval midgut143 74 of 4 1.05None
Larval tubule160 44 of 4 1.20Up
Larval hindgut145 54 of 4 1.06None
Larval fat body110 14 of 4 0.80Down
Larval trachea121 44 of 4 0.89None
Larval carcass137 54 of 4 1.01None
S2 cells (growing)227 64 of 4 1.67Up
Whole fly136 64 of 4

Looking for CG12135-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime