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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12140-RA through 18771 annotations produced 1 hits



Electron transfer flavoprotein-ubiquinone oxidoreductase (CG12140):

Annotation Number : CG12140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033465
Gbrowse : chr2R:5798397-5800993 (+) // 100.0 //
Probeset : 1628777_at
Accessions : protein= NP_610536;, nucleotide= NM_136692;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005811 // lipid particle
Interpro : 0004174 // electron-transferring-flavoprotein dehydrogenase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033465.
Homophila reports that CG12140 is a close match (0) to human gene ETFDH;MADD (NP_004444), a gene associated with Glutaricaciduria, type IIC, 231680 (3).
BioGrid reports that CG12140 interacts with CG12379 .
VDRC has 2 RNAi stocks for FBgn0033465 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 24 of 4 0.30Down
Head455 ± 244 of 4 1.50Up
Eye193 ± 184 of 4 0.64Down
Thoracicoabdominal ganglion97 ± 14 of 4 0.30Down
Salivary gland175 ± 44 of 4 0.58Down
Crop633 ± 114 of 4 2.10Up
Midgut320 ± 94 of 4 1.10None
Tubule524 ± 314 of 4 1.70Up
Hindgut402 ± 114 of 4 1.30Up
Heart690 ± 204 of 4 2.28Up
Fat body1385 ± 1204 of 4 4.58Up
Ovary238 ± 44 of 4 0.80Down
Testis21 ± 14 of 4 0.10Down
Male accessory glands124 ± 94 of 4 0.40Down
Virgin spermatheca1183 ± 414 of 4 3.91Up
Mated spermatheca1002 ± 1024 of 4 3.31Up
Adult carcass861 ± 124 of 4 2.80Up
Larval CNS113 ± 124 of 4 0.38Down
Larval Salivary gland358 ± 354 of 4 1.18None
Larval midgut310 ± 144 of 4 1.03None
Larval tubule193 ± 134 of 4 0.60Down
Larval hindgut352 ± 84 of 4 1.17Up
Larval fat body547 ± 764 of 4 1.80Up
Larval trachea199 ± 154 of 4 0.66Down
Larval carcass275 ± 184 of 4 0.91None
S2 cells (growing)156 ± 54 of 4 0.52Down
Whole fly302 ± 114 of 4

Looking for CG12140-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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