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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12141-RA through 18771 annotations produced 1 hits



Lysyl-tRNA synthetase (Aats-lys):

Annotation Number : CG12141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027084
Gbrowse : chrX:9500392-9502917 (-) // 100.0 //
Probeset : 1622945_a_at
Accessions : protein= NP_572573; /// NP_727353;, nucleotide= NM_132345; /// NM_167196;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred fr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0027084.
Homophila reports that CG12141 is a close match (3e-13) to human gene ASPRS. LBSL;DARS2 (NP_060592), a gene associated with Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105 (3).
BioGrid reports that CG12141 interacts with CG17158 CG8155 .
TRiP has 1 RNAi stocks for FBgn0027084 available for purchase.
VDRC has 1 RNAi stocks for FBgn0027084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 104 of 4 0.60Down
Head228 134 of 4 0.60Down
Eye543 734 of 4 1.46None
Thoracicoabdominal ganglion305 54 of 4 0.80Down
Salivary gland271 114 of 4 0.73Down
Crop200 94 of 4 0.50Down
Midgut215 104 of 4 0.60Down
Tubule302 354 of 4 0.80None
Hindgut166 54 of 4 0.40Down
Heart150 64 of 4 0.41Down
Fat body254 204 of 4 0.68Down
Ovary660 124 of 4 1.80Up
Testis64 34 of 4 0.20Down
Male accessory glands450 144 of 4 1.20Up
Virgin spermatheca209 84 of 4 0.56Down
Mated spermatheca249 114 of 4 0.67Down
Adult carcass184 54 of 4 0.50Down
Larval CNS641 264 of 4 1.73Up
Larval Salivary gland890 194 of 4 2.40Up
Larval midgut228 114 of 4 0.62Down
Larval tubule162 54 of 4 0.40Down
Larval hindgut371 24 of 4 1.00None
Larval fat body135 104 of 4 0.40Down
Larval trachea401 354 of 4 1.08None
Larval carcass490 444 of 4 1.32None
S2 cells (growing)461 134 of 4 1.24Up
Whole fly371 184 of 4

Looking for CG12141-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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