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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12161-RA through 18771 annotations produced 1 hits



Proteasome beta2R2 subunit (Prosbeta2R2):

Annotation Number : CG12161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037296
Gbrowse : chr3R:1043472-1045168 (-) // 99.52 //
Probeset : 1627799_at
Accessions : protein= NP_649515;, nucleotide= NM_141258;
Pathway : 0005839 // proteasome core complex // inferred from sequence or structural similarity /// 0005839 // proteasome core com
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0037296.
BDGP gene expression has embryonic in situ data for CG12161: 4 pix of staining in 1 body parts.
BioGrid reports that CG12161 interacts with CG4463 .
VDRC has 2 RNAi stocks for FBgn0037296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head4 20 of 4 0.10Down
Eye3 10 of 4 0.09Down
Thoracicoabdominal ganglion4 20 of 4 0.10Down
Salivary gland3 20 of 4 0.08Down
Crop6 00 of 4 0.10Down
Midgut3 10 of 4 0.10Down
Tubule5 00 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart2 10 of 4 0.06Down
Fat body13 21 of 4 0.32Down
Ovary2 10 of 4 0.10Down
Testis499 74 of 412.00Up
Male accessory glands9 20 of 4 0.20Down
Virgin spermatheca7 10 of 4 0.17Down
Mated spermatheca6 30 of 4 0.16Down
Adult carcass6 40 of 4 0.10Down
Larval CNS5 10 of 4 0.14Down
Larval Salivary gland5 20 of 4 0.13Down
Larval midgut6 21 of 4 0.15Down
Larval tubule5 30 of 4 0.10Down
Larval hindgut3 10 of 4 0.09Down
Larval fat body115 494 of 4 2.80None
Larval trachea5 61 of 4 0.13Down
Larval carcass6 20 of 4 0.16Down
S2 cells (growing)2 00 of 4 0.05Down
Whole fly41 24 of 4

Looking for CG12161-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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