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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12163-RD through 18771 annotations produced 1 hits



(CG33293):

Annotation Number : CG12163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053293
Gbrowse : chr3R:1065727-1066457 (-) // 100.0 //
Probeset : 1624916_a_at
Accessions : protein= NP_996150;, nucleotide= NM_206428;
Pathway : 0045169 // fusome // inferred from direct assay
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004869 // cysteine-type endo
FlyMine data for FBgn0053293.
Homophila reports that CG12163 is a close match (6e-25) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).
BioGrid reports that CG12163 interacts with CG17358 CG5094 .
VDRC has 7 RNAi stocks for FBgn0053293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye6 ± 12 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.00Down
Salivary gland16 ± 31 of 4 0.04Down
Crop4 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut9 ± 23 of 4 0.00Down
Heart10 ± 13 of 4 0.03Down
Fat body9 ± 11 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis2196 ± 354 of 4 5.90Up
Male accessory glands6 ± 21 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca7 ± 10 of 4 0.02Down
Adult carcass12 ± 42 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut8 ± 10 of 4 0.02Down
Larval tubule9 ± 11 of 4 0.00Down
Larval hindgut4 ± 11 of 4 0.01Down
Larval fat body443 ± 2244 of 4 1.20None
Larval trachea18 ± 222 of 4 0.05Down
Larval carcass5 ± 11 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly369 ± 454 of 4

Looking for CG12163-RD. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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