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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12164-RA through 18771 annotations produced 1 hits



(CG12164):

Annotation Number : CG12164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033158
Gbrowse : chr2R:3198912-3200855 (+) // 100.0 //
Probeset : 1636635_at
Accessions : protein= NP_610268;, nucleotide= NM_136424;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046914 // transition metal ion binding //
FlyMine data for FBgn0033158.
VDRC has 3 RNAi stocks for FBgn0033158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head16 ± 23 of 4 1.70None
Eye20 ± 34 of 4 2.19None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland21 ± 61 of 4 2.21None
Crop7 ± 20 of 4 0.70None
Midgut3 ± 00 of 4 0.40Down
Tubule5 ± 10 of 4 0.50Down
Hindgut5 ± 20 of 4 0.50None
Heart1 ± 00 of 4 0.15Down
Fat body10 ± 41 of 4 1.15None
Ovary2 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands43 ± 14 of 4 4.60Up
Virgin spermatheca7 ± 11 of 4 0.78None
Mated spermatheca10 ± 20 of 4 1.13None
Adult carcass17 ± 22 of 4 1.80None
Larval CNS7 ± 10 of 4 0.84None
Larval Salivary gland5 ± 10 of 4 0.59None
Larval midgut8 ± 10 of 4 0.93None
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.49None
Larval fat body8 ± 30 of 4 0.90None
Larval trachea15 ± 73 of 4 1.59None
Larval carcass15 ± 21 of 4 1.60None
S2 cells (growing)3 ± 10 of 4 0.39Down
Whole fly9 ± 00 of 4

Looking for CG12164-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime