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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12170-RA through 18771 annotations produced 1 hits



(CG12170):

Annotation Number : CG12170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037356
Gbrowse : chr3R:1462958-1464379 (+) // 100.0 //
Probeset : 1637175_at
Accessions : protein= NP_649565;, nucleotide= NM_141308;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004315 // 3-oxoacyl-[acyl-carrier-protein] syn
FlyMine data for FBgn0037356.
TRiP has 1 RNAi stocks for FBgn0037356 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 ± 24 of 4 1.00None
Head177 ± 184 of 4 1.30None
Eye163 ± 44 of 4 1.20None
Thoracicoabdominal ganglion159 ± 44 of 4 1.20None
Salivary gland236 ± 153 of 4 1.73Up
Crop157 ± 74 of 4 1.10None
Midgut145 ± 54 of 4 1.10None
Tubule222 ± 44 of 4 1.60Up
Hindgut264 ± 34 of 4 1.90Up
Heart195 ± 94 of 4 1.43Up
Fat body264 ± 174 of 4 1.93Up
Ovary154 ± 84 of 4 1.10None
Testis105 ± 24 of 4 0.80None
Male accessory glands114 ± 74 of 4 0.80None
Virgin spermatheca193 ± 74 of 4 1.42Up
Mated spermatheca182 ± 94 of 4 1.34Up
Adult carcass241 ± 124 of 4 1.80Up
Larval CNS108 ± 114 of 4 0.79None
Larval Salivary gland188 ± 74 of 4 1.38Up
Larval midgut117 ± 64 of 4 0.86None
Larval tubule154 ± 64 of 4 1.10None
Larval hindgut209 ± 84 of 4 1.53Up
Larval fat body101 ± 24 of 4 0.70Down
Larval trachea99 ± 44 of 4 0.73Down
Larval carcass145 ± 134 of 4 1.07None
S2 cells (growing)132 ± 54 of 4 0.97None
Whole fly136 ± 104 of 4

Looking for CG12170-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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