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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12171-RA through 18771 annotations produced 1 hits



chr3R:1459345-1460362 (+) // 100.0 // ():

Annotation Number : CG12171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633503_at
Accessions : protein= , nucleotide= NP_649563;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.
Homophila reports that CG12171 is a close match (9e-11) to human gene HSD17B4 (NP_000405), a gene associated with D-bifunctional protein deficiency, 261515 (3).
BioGrid reports that CG12171 interacts with CG31549 CG5047 CG7780 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 54 of 4 0.40Down
Head231 224 of 4 0.70Down
Eye187 94 of 4 0.55Down
Thoracicoabdominal ganglion129 34 of 4 0.40Down
Salivary gland430 244 of 4 1.26None
Crop315 114 of 4 0.90None
Midgut1722 734 of 4 5.00Up
Tubule1171 484 of 4 3.40Up
Hindgut489 64 of 4 1.40Up
Heart440 264 of 4 1.29Up
Fat body369 294 of 4 1.08None
Ovary372 114 of 4 1.10None
Testis30 14 of 4 0.10Down
Male accessory glands300 184 of 4 0.90None
Virgin spermatheca307 204 of 4 0.90None
Mated spermatheca258 134 of 4 0.76None
Adult carcass368 304 of 4 1.10None
Larval CNS263 524 of 4 0.77None
Larval Salivary gland530 364 of 4 1.55Up
Larval midgut629 204 of 4 1.84Up
Larval tubule412 154 of 4 1.20None
Larval hindgut412 34 of 4 1.21None
Larval fat body284 254 of 4 0.80None
Larval trachea427 164 of 4 1.25None
Larval carcass483 324 of 4 1.42Up
S2 cells (growing)439 104 of 4 1.29Up
Whole fly341 294 of 4

Looking for CG12171-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime