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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12175-RB through 18771 annotations produced 1 hits



toothreen (tth):

Annotation Number : CG12175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030502
Gbrowse : chrX:13507223-13510387 (-) // 100.0 //
Probeset : 1634740_at
Accessions : protein= NP_572904;, nucleotide= NM_132676;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0030502.
BioGrid reports that CG12175 interacts with CG13510 CG1422 CG15224 CG15707 CG17855 CG2851 CG4168 CG4394 CG5700 CG6934 CG7238 CG7761 CG8364 CG9902 .
VDRC has 5 RNAi stocks for FBgn0030502 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 14 of 4 0.90None
Head62 ± 34 of 4 0.70Down
Eye29 ± 34 of 4 0.32Down
Thoracicoabdominal ganglion59 ± 44 of 4 0.70Down
Salivary gland134 ± 124 of 4 1.48Up
Crop86 ± 34 of 4 0.90None
Midgut156 ± 134 of 4 1.70Up
Tubule71 ± 24 of 4 0.80Down
Hindgut84 ± 24 of 4 0.90None
Heart84 ± 24 of 4 0.92None
Fat body219 ± 244 of 4 2.41Up
Ovary134 ± 14 of 4 1.50Up
Testis23 ± 24 of 4 0.30Down
Male accessory glands172 ± 44 of 4 1.90Up
Virgin spermatheca206 ± 94 of 4 2.27Up
Mated spermatheca199 ± 94 of 4 2.20Up
Adult carcass115 ± 154 of 4 1.30None
Larval CNS102 ± 174 of 4 1.13None
Larval Salivary gland110 ± 74 of 4 1.21None
Larval midgut121 ± 64 of 4 1.34Up
Larval tubule118 ± 24 of 4 1.30Up
Larval hindgut77 ± 34 of 4 0.85None
Larval fat body155 ± 144 of 4 1.70Up
Larval trachea46 ± 84 of 4 0.51Down
Larval carcass65 ± 34 of 4 0.72Down
S2 cells (growing)173 ± 64 of 4 1.91Up
Whole fly91 ± 64 of 4

Looking for CG12175-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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