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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12177-RA through 18771 annotations produced 1 hits



(CG12177):

Annotation Number : CG12177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030510
Gbrowse : chrX:13571931-13574429 (-) // 100.0 //
Probeset : 1637835_at
Accessions : protein= NP_572911;, nucleotide= NM_132683;
FlyMine data for FBgn0030510.
BDGP gene expression has embryonic in situ data for CG12177: 20 pix of staining in 17 body parts.
VDRC has 1 RNAi stocks for FBgn0030510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 64 of 4 2.40Up
Head98 114 of 4 1.30None
Eye37 34 of 4 0.47Down
Thoracicoabdominal ganglion325 134 of 4 4.10Up
Salivary gland45 44 of 4 0.58Down
Crop212 74 of 4 2.70Up
Midgut46 63 of 4 0.60Down
Tubule54 54 of 4 0.70Down
Hindgut66 34 of 4 0.80None
Heart127 64 of 4 1.62Up
Fat body58 94 of 4 0.74Down
Ovary120 54 of 4 1.50Up
Testis11 14 of 4 0.10Down
Male accessory glands27 33 of 4 0.30Down
Virgin spermatheca52 44 of 4 0.66Down
Mated spermatheca61 134 of 4 0.78None
Adult carcass84 144 of 4 1.10None
Larval CNS34 54 of 4 0.44Down
Larval Salivary gland10 00 of 4 0.14Down
Larval midgut49 44 of 4 0.62Down
Larval tubule29 14 of 4 0.40Down
Larval hindgut55 44 of 4 0.70Down
Larval fat body28 53 of 4 0.40Down
Larval trachea48 24 of 4 0.62Down
Larval carcass47 44 of 4 0.60Down
S2 cells (growing)43 24 of 4 0.56Down
Whole fly78 54 of 4

Looking for CG12177-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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