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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12179-RB through 18771 annotations produced 1 hits



(CG12179):

Annotation Number : CG12179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025388
Gbrowse : chrX:4525084-4530015 (-) // 100.0 //
Probeset : 1637361_a_at
Accessions : protein= NP_572175; /// NP_726937;, nucleotide= NM_131947; /// NM_167011;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025388.
BioGrid reports that CG12179 interacts with CG1725 CG14101 CG32369 CG9653 CG9986 .
VDRC has 4 RNAi stocks for FBgn0025388 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 24 of 4 0.40Down
Head18 34 of 4 0.20Down
Eye11 14 of 4 0.10Down
Thoracicoabdominal ganglion44 24 of 4 0.40Down
Salivary gland38 24 of 4 0.34Down
Crop23 34 of 4 0.20Down
Midgut15 24 of 4 0.10Down
Tubule10 12 of 4 0.10Down
Hindgut14 14 of 4 0.10Down
Heart14 04 of 4 0.13Down
Fat body18 54 of 4 0.17Down
Ovary411 104 of 4 3.60Up
Testis574 164 of 4 5.00Up
Male accessory glands34 34 of 4 0.30Down
Virgin spermatheca19 34 of 4 0.17Down
Mated spermatheca24 24 of 4 0.21Down
Adult carcass16 12 of 4 0.10Down
Larval CNS205 174 of 4 1.80Up
Larval Salivary gland38 34 of 4 0.33Down
Larval midgut17 13 of 4 0.16Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut21 14 of 4 0.18Down
Larval fat body87 414 of 4 0.80None
Larval trachea40 24 of 4 0.36Down
Larval carcass25 14 of 4 0.23Down
S2 cells (growing)18 14 of 4 0.16Down
Whole fly114 174 of 4

Looking for CG12179-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime