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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12186-RA through 18771 annotations produced 1 hits



Prolyl-tRNA synthetase (Aats-pro):

Annotation Number : CG12186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027082
Gbrowse : chr3L:2650190-2651834 (-) // 100.0 //
Probeset : 1629758_at
Accessions : protein= NP_647737;, nucleotide= NM_139480;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0027082.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 44 of 4 1.40Up
Head34 34 of 4 0.80Down
Eye29 24 of 4 0.65Down
Thoracicoabdominal ganglion62 24 of 4 1.40Up
Salivary gland44 34 of 4 0.98None
Crop43 24 of 4 1.00None
Midgut24 12 of 4 0.50Down
Tubule48 14 of 4 1.10Up
Hindgut68 34 of 4 1.50Up
Heart31 24 of 4 0.69Down
Fat body32 54 of 4 0.70Down
Ovary84 24 of 4 1.80Up
Testis15 13 of 4 0.30Down
Male accessory glands42 54 of 4 0.90None
Virgin spermatheca33 24 of 4 0.75Down
Mated spermatheca37 34 of 4 0.83None
Adult carcass36 62 of 4 0.80None
Larval CNS59 44 of 4 1.30Up
Larval Salivary gland33 24 of 4 0.73Down
Larval midgut27 33 of 4 0.61Down
Larval tubule22 04 of 4 0.50Down
Larval hindgut56 44 of 4 1.25None
Larval fat body23 13 of 4 0.50Down
Larval trachea39 104 of 4 0.87None
Larval carcass29 34 of 4 0.64Down
S2 cells (growing)59 24 of 4 1.32Up
Whole fly45 14 of 4

Looking for CG12186-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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