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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12190-RA through 18771 annotations produced 1 hits



Ring and YY1 Binding Protein (RYBP):

Annotation Number : CG12190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034763
Gbrowse : chr2R:18558256-18560717 (+) // 100.0 //
Probeset : 1628977_at
Accessions : protein= NP_611705;, nucleotide= NM_137861;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016604 // nuclear body // inferred from direct assa
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0034763.
TRiP has 1 RNAi stocks for FBgn0034763 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 54 of 4 4.70Up
Head63 74 of 4 1.60Up
Eye74 44 of 4 1.92Up
Thoracicoabdominal ganglion177 104 of 4 4.50Up
Salivary gland66 73 of 4 1.70Up
Crop55 34 of 4 1.40Up
Midgut34 34 of 4 0.90None
Tubule34 14 of 4 0.90Down
Hindgut53 24 of 4 1.40Up
Heart40 34 of 4 1.05None
Fat body54 84 of 4 1.39Up
Ovary89 34 of 4 2.30Up
Testis13 13 of 4 0.40Down
Male accessory glands55 84 of 4 1.40None
Virgin spermatheca43 24 of 4 1.10None
Mated spermatheca49 54 of 4 1.26None
Adult carcass51 22 of 4 1.30Up
Larval CNS210 244 of 4 5.39Up
Larval Salivary gland67 54 of 4 1.73Up
Larval midgut47 34 of 4 1.23None
Larval tubule134 74 of 4 3.40Up
Larval hindgut68 74 of 4 1.76Up
Larval fat body60 44 of 4 1.60Up
Larval trachea80 74 of 4 2.05Up
Larval carcass66 64 of 4 1.70Up
S2 cells (growing)62 14 of 4 1.59Up
Whole fly39 14 of 4

Looking for CG12190-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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