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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12193-RA through 18771 annotations produced 1 hits



Olfactory receptor 22A.1 (Or22a):

Annotation Number : CG12193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026398
Gbrowse : chr2L:1520612-1522151 (+) // 100.0 //
Probeset : 1629646_at
Accessions : protein= NP_523453;, nucleotide= NM_078729;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026398.
BioGrid reports that CG12193 interacts with CG16869 CG17134 .
VDRC has 1 RNAi stocks for FBgn0026398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head10 ± 13 of 4 1.90None
Eye3 ± 10 of 4 0.62None
Thoracicoabdominal ganglion5 ± 10 of 4 1.00None
Salivary gland11 ± 41 of 4 2.26None
Crop5 ± 20 of 4 1.00None
Midgut1 ± 00 of 4 0.20None
Tubule4 ± 00 of 4 0.80Down
Hindgut3 ± 10 of 4 0.70None
Heart1 ± 10 of 4 0.35None
Fat body5 ± 40 of 4 1.13None
Ovary3 ± 00 of 4 0.70None
Testis3 ± 00 of 4 0.70None
Male accessory glands6 ± 30 of 4 1.30None
Virgin spermatheca3 ± 00 of 4 0.61None
Mated spermatheca6 ± 10 of 4 1.24None
Adult carcass2 ± 00 of 4 0.40None
Larval CNS4 ± 10 of 4 0.84None
Larval Salivary gland2 ± 00 of 4 0.40None
Larval midgut1 ± 00 of 4 0.35None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.31None
Larval fat body2 ± 10 of 4 0.60None
Larval trachea3 ± 30 of 4 0.73None
Larval carcass2 ± 00 of 4 0.43None
S2 cells (growing)2 ± 00 of 4 0.39None
Whole fly5 ± 20 of 4

Looking for CG12193-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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