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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12206-RA through 18771 annotations produced 1 hits



(CG12206):

Annotation Number : CG12206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029662
Gbrowse : chrX:3359769-3368553 (-) // 100.0 //
Probeset : 1630969_s_at
Accessions : protein= NP_570060; /// NP_726865; /// NP_726866;, nucleotide= NM_130704; /// NM_166973; /// NM_166974;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0029662.
BDGP gene expression has embryonic in situ data for CG12206: 14 pix of staining in 7 body parts.
BioGrid reports that CG12206 interacts with CG30092 CG3953 .
VDRC has 1 RNAi stocks for FBgn0029662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.50Down
Head2 ± 00 of 4 0.40Down
Eye6 ± 13 of 4 0.87None
Thoracicoabdominal ganglion2 ± 11 of 4 0.30Down
Salivary gland7 ± 20 of 4 1.04None
Crop3 ± 10 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.20Down
Heart3 ± 01 of 4 0.40Down
Fat body1 ± 10 of 4 0.23Down
Ovary4 ± 12 of 4 0.70None
Testis38 ± 24 of 4 5.20Up
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca2 ± 11 of 4 0.38None
Mated spermatheca3 ± 11 of 4 0.44Down
Adult carcass6 ± 20 of 4 0.80None
Larval CNS12 ± 34 of 4 1.66None
Larval Salivary gland8 ± 12 of 4 1.15None
Larval midgut2 ± 10 of 4 0.30Down
Larval tubule2 ± 11 of 4 0.30Down
Larval hindgut25 ± 14 of 4 3.37Up
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea127 ± 214 of 417.06Up
Larval carcass182 ± 114 of 424.46Up
S2 cells (growing)15 ± 14 of 4 2.03Up
Whole fly7 ± 13 of 4

Looking for CG12206-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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