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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1221-RA through 18771 annotations produced 1 hits



miple (miple):

Annotation Number : CG1221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027111
Gbrowse : chr3L:267763-270336 (+) // 99.79 //
Probeset : 1626667_at
Accessions : protein= NP_612022; /// NP_995947;, nucleotide= NM_138178; /// NM_206225;
Pathway : 0005576 // extracellular region // inferred from direct assay
Interpro : 0008083 // growth factor activity // inferred from electronic annotation /// 0008201 // heparin binding // inferred from
FlyMine data for FBgn0027111.
BDGP gene expression has embryonic in situ data for miple: 36 pix of staining in 13 body parts.
TRiP has 1 RNAi stocks for FBgn0027111 available for purchase.
VDRC has 5 RNAi stocks for FBgn0027111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2066 ± 714 of 424.60Up
Head739 ± 514 of 4 8.80Up
Eye113 ± 114 of 4 1.35None
Thoracicoabdominal ganglion1798 ± 224 of 421.40Up
Salivary gland5 ± 20 of 4 0.07Down
Crop3 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 11 of 4 0.00Down
Heart4 ± 00 of 4 0.05Down
Fat body4 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass17 ± 43 of 4 0.20Down
Larval CNS1478 ± 1334 of 417.62Up
Larval Salivary gland3 ± 11 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea11 ± 22 of 4 0.14Down
Larval carcass13 ± 14 of 4 0.16Down
S2 cells (growing)26 ± 24 of 4 0.32Down
Whole fly83 ± 64 of 4

Looking for CG1221-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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