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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12229-RA through 18771 annotations produced 1 hits


pyruvate kinase /// (CG12229 /// CG14101):

Annotation Number : CG12229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036723
Gbrowse : chr3L:17427571-17429531 (-) // 100.0 //
Probeset : 1627928_at
Accessions : protein= NP_648980;, nucleotide= NM_140723;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // infer
FlyMine data for FBgn0036723.
BDGP gene expression has embryonic in situ data for CG12229: 4 pix of staining in 1 body parts.
BioGrid reports that CG12229 interacts with CG6518 CG7697 .
VDRC has 2 RNAi stocks for FBgn0036723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland10 ± 10 of 4 0.09Down
Crop4 ± 10 of 4 0.00Down
Midgut6 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.00Down
Hindgut6 ± 21 of 4 0.10Down
Heart4 ± 00 of 4 0.04Down
Fat body4 ± 00 of 4 0.04Down
Ovary3 ± 00 of 4 0.00Down
Testis1480 ± 164 of 413.00Up
Male accessory glands6 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.03Down
Mated spermatheca6 ± 00 of 4 0.06Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut5 ± 00 of 4 0.05Down
Larval tubule7 ± 11 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.05Down
Larval fat body96 ± 524 of 4 0.80None
Larval trachea5 ± 41 of 4 0.05Down
Larval carcass6 ± 21 of 4 0.06Down
S2 cells (growing)2 ± 10 of 4 0.02Down
Whole fly114 ± 54 of 4

Looking for CG12229-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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