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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12230-RB through 18771 annotations produced 1 hits



carnation (car):

Annotation Number : CG12230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000257
Gbrowse : chrX:19460051-19463440 (+) // 100.0 //
Probeset : 1629509_s_at
Accessions : protein= NP_523410; /// NP_728266;, nucleotide= NM_078686; /// NM_167664;
Pathway : 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 000
Interpro : 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0000257.
BDGP gene expression has embryonic in situ data for car: 52 pix of staining in 16 body parts.
Homophila reports that CG12230 is a close match (5e-61) to human gene VPS33B (NP_061138), a gene associated with ARC syndrome, 208085 (3).
BioGrid reports that CG12230 interacts with CG3093 .
TRiP has 2 RNAi stocks for FBgn0000257 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain179 54 of 4 3.60Up
Head102 44 of 4 2.00Up
Eye98 54 of 4 1.95Up
Thoracicoabdominal ganglion186 74 of 4 3.70Up
Salivary gland112 94 of 4 2.23Up
Crop81 34 of 4 1.60Up
Midgut56 34 of 4 1.10None
Tubule54 34 of 4 1.10None
Hindgut67 24 of 4 1.30Up
Heart88 54 of 4 1.74Up
Fat body87 74 of 4 1.72Up
Ovary42 24 of 4 0.80None
Testis11 24 of 4 0.20Down
Male accessory glands73 34 of 4 1.50Up
Virgin spermatheca64 44 of 4 1.27Up
Mated spermatheca59 24 of 4 1.17Up
Adult carcass63 44 of 4 1.30Up
Larval CNS190 124 of 4 3.77Up
Larval Salivary gland99 104 of 4 1.97Up
Larval midgut92 44 of 4 1.83Up
Larval tubule66 24 of 4 1.30Up
Larval hindgut99 34 of 4 1.97Up
Larval fat body58 84 of 4 1.20None
Larval trachea81 64 of 4 1.61Up
Larval carcass102 44 of 4 2.03Up
S2 cells (growing)95 24 of 4 1.88Up
Whole fly50 14 of 4

Looking for CG12230-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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