FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12230-RB through 18771 annotations produced 1 hits

carnation (car):

Annotation Number : CG12230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000257
Gbrowse : chrX:19460051-19463440 (+) // 100.0 //
Probeset : 1629509_s_at
Accessions : protein= NP_523410; /// NP_728266;, nucleotide= NM_078686; /// NM_167664;
Pathway : 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation /// 000
Interpro : 0000149 // SNARE binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0000257.
BDGP gene expression has embryonic in situ data for car: 52 pix of staining in 16 body parts.
Homophila reports that CG12230 is a close match (5e-61) to human gene VPS33B (NP_061138), a gene associated with ARC syndrome, 208085 (3).
BioGrid reports that CG12230 interacts with CG3093 .
TRiP has 2 RNAi stocks for FBgn0000257 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000257 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	179 ± 5	4 of 4	3.60	Up
Head	102 ± 4	4 of 4	2.00	Up
Eye	98 ± 5	4 of 4	1.95	Up
Thoracicoabdominal ganglion	186 ± 7	4 of 4	3.70	Up
Salivary gland	112 ± 9	4 of 4	2.23	Up
Crop	81 ± 3	4 of 4	1.60	Up
Midgut	56 ± 3	4 of 4	1.10	None
Tubule	54 ± 3	4 of 4	1.10	None
Hindgut	67 ± 2	4 of 4	1.30	Up
Heart	88 ± 5	4 of 4	1.74	Up
Fat body	87 ± 7	4 of 4	1.72	Up
Ovary	42 ± 2	4 of 4	0.80	None
Testis	11 ± 2	4 of 4	0.20	Down
Male accessory glands	73 ± 3	4 of 4	1.50	Up
Virgin spermatheca	64 ± 4	4 of 4	1.27	Up
Mated spermatheca	59 ± 2	4 of 4	1.17	Up
Adult carcass	63 ± 4	4 of 4	1.30	Up
Larval CNS	190 ± 12	4 of 4	3.77	Up
Larval Salivary gland	99 ± 10	4 of 4	1.97	Up
Larval midgut	92 ± 4	4 of 4	1.83	Up
Larval tubule	66 ± 2	4 of 4	1.30	Up
Larval hindgut	99 ± 3	4 of 4	1.97	Up
Larval fat body	58 ± 8	4 of 4	1.20	None
Larval trachea	81 ± 6	4 of 4	1.61	Up
Larval carcass	102 ± 4	4 of 4	2.03	Up
S2 cells (growing)	95 ± 2	4 of 4	1.88	Up
Whole fly	50 ± 1	4 of 4

Looking for CG12230-RB. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720