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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12233-RA through 18771 annotations produced 1 hits



lethal (1) G0156 (l(1)G0156):

Annotation Number : CG12233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027291
Gbrowse : chrX:19413163-19415843 (-) // 98.81 //
Probeset : 1634846_a_at
Accessions : protein= NP_573388; /// NP_728257;, nucleotide= NM_133160; /// NM_167657;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+)
FlyMine data for FBgn0027291.
BioGrid reports that CG12233 interacts with CG16947 CG17153 CG6172 .
VDRC has 5 RNAi stocks for FBgn0027291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1222 274 of 4 0.80Down
Head1424 364 of 4 0.90Down
Eye2077 624 of 4 1.34Up
Thoracicoabdominal ganglion1967 794 of 4 1.30Up
Salivary gland2034 1154 of 4 1.31Up
Crop1274 364 of 4 0.80Down
Midgut1493 474 of 4 1.00None
Tubule2810 1884 of 4 1.80Up
Hindgut2357 814 of 4 1.50Up
Heart1964 384 of 4 1.27Up
Fat body1038 634 of 4 0.67Down
Ovary921 174 of 4 0.60Down
Testis134 54 of 4 0.10Down
Male accessory glands625 274 of 4 0.40Down
Virgin spermatheca1026 514 of 4 0.66Down
Mated spermatheca927 484 of 4 0.60Down
Adult carcass3385 2344 of 4 2.20Up
Larval CNS1161 734 of 4 0.75Down
Larval Salivary gland1534 584 of 4 0.99None
Larval midgut1237 574 of 4 0.80Down
Larval tubule1437 984 of 4 0.90None
Larval hindgut2498 1304 of 4 1.61Up
Larval fat body455 464 of 4 0.30Down
Larval trachea1573 534 of 4 1.02None
Larval carcass2676 2764 of 4 1.73Up
S2 cells (growing)744 114 of 4 0.48Down
Whole fly1549 324 of 4

Looking for CG12233-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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