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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12235-RA through 18771 annotations produced 1 hits



Arp11 (Arp11):

Annotation Number : CG12235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031050
Gbrowse : chrX:19538560-19540079 (-) // 100.0 //
Probeset : 1636320_at
Accessions : protein= NP_608338;, nucleotide= NM_134494;
Pathway : 0005884 // actin filament // inferred from sequence or structural similarity
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005200 // structural constituent of cyt
FlyMine data for FBgn0031050.
Homophila reports that CG12235 is a close match (4e-16) to human gene ACTA2;ACTSA;AAT6 (NP_001604), a gene associated with Aortic aneurysm, familial thoracic 6, 611788 (3).
BioGrid reports that CG12235 interacts with CG9874 CG2862 CG3548 CG3644 CG5971 CG7001 .
VDRC has 3 RNAi stocks for FBgn0031050 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 ± 14 of 4 1.30Up
Head130 ± 34 of 4 1.10None
Eye208 ± 114 of 4 1.78Up
Thoracicoabdominal ganglion173 ± 84 of 4 1.50Up
Salivary gland144 ± 44 of 4 1.24Up
Crop219 ± 84 of 4 1.90Up
Midgut154 ± 64 of 4 1.30Up
Tubule139 ± 74 of 4 1.20Up
Hindgut182 ± 34 of 4 1.60Up
Heart115 ± 24 of 4 0.99None
Fat body106 ± 54 of 4 0.91None
Ovary134 ± 24 of 4 1.10None
Testis60 ± 44 of 4 0.50Down
Male accessory glands80 ± 44 of 4 0.70Down
Virgin spermatheca87 ± 44 of 4 0.75Down
Mated spermatheca106 ± 54 of 4 0.91None
Adult carcass102 ± 54 of 4 0.90None
Larval CNS159 ± 14 of 4 1.36Up
Larval Salivary gland271 ± 54 of 4 2.32Up
Larval midgut187 ± 154 of 4 1.60Up
Larval tubule139 ± 44 of 4 1.20None
Larval hindgut206 ± 214 of 4 1.76Up
Larval fat body82 ± 74 of 4 0.70Down
Larval trachea219 ± 294 of 4 1.88Up
Larval carcass126 ± 124 of 4 1.08None
S2 cells (growing)170 ± 44 of 4 1.46Up
Whole fly117 ± 74 of 4

Looking for CG12235-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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