FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12237-RA through 18771 annotations produced 1 hits

(CG12237):

Annotation Number : CG12237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031048
Gbrowse : chrX:19535222-19536899 (-) // 100.0 //
Probeset : 1628920_at
Accessions : protein= NP_608336;, nucleotide= NM_134492;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred fro
FlyMine data for FBgn0031048.
BDGP gene expression has embryonic in situ data for CG12237: 8 pix of staining in 1 body parts.
BioGrid reports that CG12237 interacts with CG13627 Dmel CG34110 .
TRiP has 1 RNAi stocks for FBgn0031048 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031048 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	380 ± 17	4 of 4	1.40	Up
Head	279 ± 28	4 of 4	1.10	None
Eye	568 ± 19	4 of 4	2.15	Up
Thoracicoabdominal ganglion	335 ± 3	4 of 4	1.30	None
Salivary gland	288 ± 18	4 of 4	1.09	None
Crop	339 ± 9	4 of 4	1.30	None
Midgut	181 ± 10	4 of 4	0.70	None
Tubule	384 ± 15	4 of 4	1.40	Up
Hindgut	394 ± 10	4 of 4	1.50	Up
Heart	413 ± 25	4 of 4	1.56	Up
Fat body	220 ± 22	4 of 4	0.83	None
Ovary	319 ± 5	4 of 4	1.20	None
Testis	83 ± 1	4 of 4	0.30	Down
Male accessory glands	245 ± 30	4 of 4	0.90	None
Virgin spermatheca	205 ± 10	4 of 4	0.78	None
Mated spermatheca	262 ± 6	4 of 4	0.99	None
Adult carcass	198 ± 7	4 of 4	0.80	None
Larval CNS	310 ± 29	4 of 4	1.17	None
Larval Salivary gland	302 ± 20	4 of 4	1.14	None
Larval midgut	169 ± 13	4 of 4	0.64	None
Larval tubule	199 ± 6	4 of 4	0.80	None
Larval hindgut	294 ± 29	4 of 4	1.11	None
Larval fat body	126 ± 12	4 of 4	0.50	Down
Larval trachea	601 ± 13	4 of 4	2.27	Up
Larval carcass	201 ± 13	4 of 4	0.76	None
S2 cells (growing)	472 ± 10	4 of 4	1.78	Up
Whole fly	265 ± 34	4 of 4

Looking for CG12237-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720