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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12242-RA through 18771 annotations produced 1 hits

Glutathione S transferase D5 (GstD5):

Annotation Number : CG12242
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010041
Gbrowse : chr3R:8201485-8202136 (+) // 100.0 //
Probeset : 1634152_at
Accessions : protein= NP_524914;, nucleotide= NM_080175;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0010041.
VDRC has 2 RNAi stocks for FBgn0010041 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.30Down
Head4 21 of 4 0.40None
Eye1 00 of 4 0.18Down
Thoracicoabdominal ganglion2 10 of 4 0.30Down
Salivary gland5 20 of 4 0.48None
Crop1 00 of 4 0.10Down
Midgut162 154 of 414.90Up
Tubule35 24 of 4 3.30Up
Hindgut21 14 of 4 2.00Up
Heart86 304 of 4 7.93None
Fat body2 20 of 4 0.19Down
Ovary1 00 of 4 0.20Down
Testis123 104 of 411.30Up
Male accessory glands58 353 of 4 5.40None
Virgin spermatheca3 20 of 4 0.28Down
Mated spermatheca14 42 of 4 1.35None
Adult carcass3 10 of 4 0.30Down
Larval CNS10 24 of 4 0.99None
Larval Salivary gland4 00 of 4 0.40Down
Larval midgut45 84 of 4 4.18Up
Larval tubule24 14 of 4 2.30Up
Larval hindgut27 14 of 4 2.54Up
Larval fat body8 40 of 4 0.80None
Larval trachea5 30 of 4 0.46Down
Larval carcass17 34 of 4 1.57None
S2 cells (growing)196 164 of 418.02Up
Whole fly10 13 of 4

Looking for CG12242-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime