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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12245-RA through 18771 annotations produced 1 hits

glide glide2 (gcm):

Annotation Number : CG12245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014179
Gbrowse : chr2L:9579448-9581742 (-) // 100.0 //
Probeset : 1631126_at
Accessions : protein= NP_477108;, nucleotide= NM_057760;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006952 // defense response // non-traceable author statement
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0014179.
BDGP gene expression has embryonic in situ data for gcm: 64 pix of staining in 15 body parts.
Homophila reports that CG12245 is a close match (1e-53) to human gene GCMB (NP_004743), a gene associated with Hypoparathyroidism, familial isolated, 146200 (3).
BioGrid reports that CG12245 interacts with CG7109 CG32134 CG31240 CG3858 .
TRiP has 3 RNAi stocks for FBgn0014179 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014179 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 14 of 4 1.40None
Head4 10 of 4 0.60None
Eye1 00 of 4 0.26Down
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland10 30 of 4 1.45None
Crop3 10 of 4 0.50None
Midgut2 00 of 4 0.30Down
Tubule3 00 of 4 0.50Down
Hindgut3 10 of 4 0.40None
Heart3 10 of 4 0.41None
Fat body6 61 of 4 0.81None
Ovary1 00 of 4 0.20Down
Testis15 04 of 4 2.00Up
Male accessory glands6 10 of 4 0.90None
Virgin spermatheca2 00 of 4 0.29Down
Mated spermatheca3 20 of 4 0.46None
Adult carcass2 00 of 4 0.30None
Larval CNS205 354 of 427.63Up
Larval Salivary gland4 11 of 4 0.57None
Larval midgut0 00 of 4 0.07Down
Larval tubule2 00 of 4 0.40None
Larval hindgut1 00 of 4 0.21Down
Larval fat body5 31 of 4 0.70None
Larval trachea12 14 of 4 1.62None
Larval carcass3 10 of 4 0.42None
S2 cells (growing)0 00 of 4 0.11Down
Whole fly7 11 of 4

Looking for CG12245-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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