FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12249-RA through 18771 annotations produced 1 hits

Miranda (mira):

Annotation Number : CG12249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021776
Gbrowse : chr3R:15757520-15760842 (-) // 100.0 //
Probeset : 1639183_a_at
Accessions : protein= NP_477291; /// NP_477292;, nucleotide= NM_057943; /// NM_057944;
Pathway : embryo // inferred from mutant phenotype /// 0030162 // regulation of proteolysis // inferred from mutant phenotype ///
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005818 //
FlyMine data for FBgn0021776.
BDGP gene expression has embryonic in situ data for mira: 77 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0021776 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021776 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 2	4 of 4	1.20	None
Head	7 ± 1	0 of 4	0.30	None
Eye	4 ± 1	1 of 4	0.20	None
Thoracicoabdominal ganglion	15 ± 1	4 of 4	0.70	None
Salivary gland	22 ± 1	2 of 4	1.05	None
Crop	11 ± 2	3 of 4	0.50	None
Midgut	64 ± 4	4 of 4	3.00	Up
Tubule	10 ± 0	2 of 4	0.50	Down
Hindgut	27 ± 2	4 of 4	1.30	None
Heart	3 ± 0	0 of 4	0.14	None
Fat body	15 ± 4	3 of 4	0.73	None
Ovary	3 ± 0	0 of 4	0.20	None
Testis	2 ± 0	1 of 4	0.10	None
Male accessory glands	12 ± 2	1 of 4	0.60	None
Virgin spermatheca	12 ± 0	4 of 4	0.57	None
Mated spermatheca	10 ± 1	4 of 4	0.49	None
Adult carcass	10 ± 0	0 of 4	0.50	None
Larval CNS	517 ± 17	4 of 4	24.48	Up
Larval Salivary gland	10 ± 2	2 of 4	0.47	None
Larval midgut	26 ± 1	4 of 4	1.23	None
Larval tubule	20 ± 2	4 of 4	1.00	None
Larval hindgut	11 ± 1	3 of 4	0.54	None
Larval fat body	8 ± 1	0 of 4	0.40	None
Larval trachea	13 ± 0	4 of 4	0.65	None
Larval carcass	8 ± 0	3 of 4	0.38	None
S2 cells (growing)	8 ± 0	1 of 4	0.38	None
Whole fly	21 ± 7	4 of 4

Looking for CG12249-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720