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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12249-RA through 18771 annotations produced 1 hits



Miranda (mira):

Annotation Number : CG12249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021776
Gbrowse : chr3R:15757520-15760842 (-) // 100.0 //
Probeset : 1639183_a_at
Accessions : protein= NP_477291; /// NP_477292;, nucleotide= NM_057943; /// NM_057944;
Pathway : embryo // inferred from mutant phenotype /// 0030162 // regulation of proteolysis // inferred from mutant phenotype ///
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // traceable author statement /// 0005818 //
FlyMine data for FBgn0021776.
BDGP gene expression has embryonic in situ data for mira: 77 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0021776 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 24 of 4 1.20None
Head7 10 of 4 0.30None
Eye4 11 of 4 0.20None
Thoracicoabdominal ganglion15 14 of 4 0.70None
Salivary gland22 12 of 4 1.05None
Crop11 23 of 4 0.50None
Midgut64 44 of 4 3.00Up
Tubule10 02 of 4 0.50Down
Hindgut27 24 of 4 1.30None
Heart3 00 of 4 0.14None
Fat body15 43 of 4 0.73None
Ovary3 00 of 4 0.20None
Testis2 01 of 4 0.10None
Male accessory glands12 21 of 4 0.60None
Virgin spermatheca12 04 of 4 0.57None
Mated spermatheca10 14 of 4 0.49None
Adult carcass10 00 of 4 0.50None
Larval CNS517 174 of 424.48Up
Larval Salivary gland10 22 of 4 0.47None
Larval midgut26 14 of 4 1.23None
Larval tubule20 24 of 4 1.00None
Larval hindgut11 13 of 4 0.54None
Larval fat body8 10 of 4 0.40None
Larval trachea13 04 of 4 0.65None
Larval carcass8 03 of 4 0.38None
S2 cells (growing)8 01 of 4 0.38None
Whole fly21 74 of 4

Looking for CG12249-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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