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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12251-RA through 18771 annotations produced 1 hits



aquaporin /// mitochondrial ATP synthase alpha subunit (AQP /// blw):

Annotation Number : CG12251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033807
Gbrowse : chr2R:9099841-9101433 (-) // 99.59 //
Probeset : 1626560_at
Accessions : protein= NP_001163140; /// NP_523728; /// NP_726243;, nucleotide= NM_001169669; /// NM_079004; /// NM_166554;
Pathway : engulfment // inferred from mutant phenotype /// 0007286 // spermatid development // inferred from mutant phenotype ///
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0033807.
BDGP gene expression has embryonic in situ data for blw: 10 pix of staining in 12 body parts.
VDRC has 1 RNAi stocks for FBgn0033807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.00Down
Head206 44 of 4 0.70None
Eye29 34 of 4 0.11Down
Thoracicoabdominal ganglion41 64 of 4 0.10Down
Salivary gland18 40 of 4 0.07Down
Crop632 164 of 4 2.30Up
Midgut44 24 of 4 0.20Down
Tubule14 11 of 4 0.10Down
Hindgut233 64 of 4 0.80None
Heart338 194 of 4 1.23None
Fat body18 33 of 4 0.07Down
Ovary2 01 of 4 0.00Down
Testis141 74 of 4 0.50Down
Male accessory glands129 124 of 4 0.50Down
Virgin spermatheca26 14 of 4 0.10Down
Mated spermatheca41 44 of 4 0.15Down
Adult carcass1008 824 of 4 3.70Up
Larval CNS5 10 of 4 0.02Down
Larval Salivary gland3 00 of 4 0.01Down
Larval midgut9 11 of 4 0.03Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut73 54 of 4 0.27Down
Larval fat body34 144 of 4 0.10Down
Larval trachea16 103 of 4 0.06Down
Larval carcass338 204 of 4 1.23None
S2 cells (growing)6 01 of 4 0.02Down
Whole fly276 364 of 4

Looking for CG12251-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime