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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12255-RA through 18771 annotations produced 1 hits



CG12255 (Cpr72Eb):

Annotation Number : CG12255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036618
Gbrowse : chr3L:16358096-16358750 (+) // 100.0 //
Probeset : 1623596_at
Accessions : protein= NP_648883;, nucleotide= NM_140626;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0036618.
VDRC has 2 RNAi stocks for FBgn0036618 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.50Down
Head14 ± 12 of 4 1.70Up
Eye9 ± 00 of 4 1.09None
Thoracicoabdominal ganglion8 ± 31 of 4 1.00None
Salivary gland7 ± 20 of 4 0.91None
Crop10 ± 10 of 4 1.20None
Midgut16 ± 10 of 4 2.00Up
Tubule7 ± 10 of 4 0.90None
Hindgut9 ± 32 of 4 1.10None
Heart2 ± 00 of 4 0.30Down
Fat body9 ± 30 of 4 1.09None
Ovary4 ± 00 of 4 0.50None
Testis3 ± 10 of 4 0.40None
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca7 ± 21 of 4 0.85None
Mated spermatheca6 ± 20 of 4 0.78None
Adult carcass19 ± 42 of 4 2.30None
Larval CNS7 ± 01 of 4 0.94None
Larval Salivary gland6 ± 20 of 4 0.80None
Larval midgut8 ± 20 of 4 0.95None
Larval tubule4 ± 00 of 4 0.50Down
Larval hindgut5 ± 10 of 4 0.66None
Larval fat body17 ± 42 of 4 2.10None
Larval trachea3 ± 20 of 4 0.39Down
Larval carcass13 ± 21 of 4 1.56None
S2 cells (growing)14 ± 10 of 4 1.67Up
Whole fly8 ± 10 of 4

Looking for CG12255-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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