FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12256-RA through 18771 annotations produced 1 hits

(CG12256):

Annotation Number : CG12256
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038002
Gbrowse : chr3R:8051085-8051985 (-) // 100.0 //
Probeset : 1629618_at
Accessions : protein= NP_650166;, nucleotide= NM_141909;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038002.
Homophila reports that CG12256 is a close match (9e-12) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
BioGrid reports that CG12256 interacts with CG13016 CG2812 CG32031 CG32549 CG3689 CG3929 CG4104 CG4183 CG4466 CG4800 CG5440 CG5642 CG5792 CG6779 CG6890 CG7184 CG7399 CG8882 CG6447 CG6478 .
VDRC has 4 RNAi stocks for FBgn0038002 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	171 ± 18	4 of 4	27.30	Up
Head	55 ± 9	4 of 4	8.90	Up
Eye	16 ± 1	4 of 4	2.59	Up
Thoracicoabdominal ganglion	245 ± 6	4 of 4	39.20	Up
Salivary gland	4 ± 1	0 of 4	0.78	None
Crop	2 ± 1	0 of 4	0.40	None
Midgut	5 ± 2	0 of 4	0.90	None
Tubule	2 ± 0	0 of 4	0.40	Down
Hindgut	3 ± 1	0 of 4	0.60	None
Heart	4 ± 1	0 of 4	0.68	None
Fat body	3 ± 3	0 of 4	0.50	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	4 ± 0	0 of 4	0.70	None
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.19	None
Mated spermatheca	2 ± 1	0 of 4	0.41	None
Adult carcass	6 ± 1	0 of 4	1.10	None
Larval CNS	3 ± 2	0 of 4	0.63	None
Larval Salivary gland	3 ± 1	0 of 4	0.47	None
Larval midgut	1 ± 0	0 of 4	0.25	None
Larval tubule	0 ± 0	0 of 4	0.10	None
Larval hindgut	2 ± 1	0 of 4	0.35	None
Larval fat body	3 ± 1	0 of 4	0.60	None
Larval trachea	2 ± 3	0 of 4	0.35	None
Larval carcass	1 ± 0	0 of 4	0.18	None
S2 cells (growing)	1 ± 0	0 of 4	0.27	None
Whole fly	6 ± 2	0 of 4

Looking for CG12256-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720