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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12261-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S22 (mRpS22):

Annotation Number : CG12261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039555
Gbrowse : chr3R:23742630-23743970 (+) // 100.0 //
Probeset : 1628169_at
Accessions : protein= NP_524537;, nucleotide= NM_079813;
Pathway : 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0039555.
Homophila reports that CG12261 is a close match (1e-30) to human gene C3orf5;COXPD5;MRPS22 (NP_064576), a gene associated with Combined oxidative phosphorylation deficiency 5, 611719 (3).
BioGrid reports that CG12261 interacts with CG14480 .
VDRC has 2 RNAi stocks for FBgn0039555 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 ± 44 of 4 0.90None
Head157 ± 104 of 4 0.70None
Eye256 ± 134 of 4 1.20None
Thoracicoabdominal ganglion226 ± 174 of 4 1.10None
Salivary gland171 ± 134 of 4 0.80None
Crop185 ± 64 of 4 0.90None
Midgut221 ± 54 of 4 1.00None
Tubule162 ± 64 of 4 0.80Down
Hindgut240 ± 84 of 4 1.10None
Heart195 ± 134 of 4 0.91None
Fat body156 ± 224 of 4 0.73None
Ovary225 ± 34 of 4 1.10None
Testis167 ± 94 of 4 0.80None
Male accessory glands206 ± 124 of 4 1.00None
Virgin spermatheca121 ± 54 of 4 0.57Down
Mated spermatheca127 ± 54 of 4 0.59Down
Adult carcass175 ± 204 of 4 0.80None
Larval CNS185 ± 84 of 4 0.87None
Larval Salivary gland225 ± 104 of 4 1.05None
Larval midgut196 ± 84 of 4 0.92None
Larval tubule119 ± 34 of 4 0.60Down
Larval hindgut262 ± 214 of 4 1.23None
Larval fat body104 ± 74 of 4 0.50Down
Larval trachea287 ± 144 of 4 1.35Up
Larval carcass225 ± 164 of 4 1.06None
S2 cells (growing)379 ± 164 of 4 1.78Up
Whole fly213 ± 234 of 4

Looking for CG12261-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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