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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12272-RA through 18771 annotations produced 1 hits



(CG12272):

Annotation Number : CG12272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036571
Gbrowse : chr3L:16115286-16119099 (+) // 100.0 //
Probeset : 1639938_at
Accessions : protein= NP_001163454; /// NP_648840;, nucleotide= NM_001169983; /// NM_140583;
FlyMine data for FBgn0036571.
Homophila reports that CG12272 is a close match (0) to human gene KIAA0196;SPG8 (NP_055661), a gene associated with Spastic paraplegia-8, 603563 (3).
BioGrid reports that CG12272 interacts with CG13458 CG13966 CG17342 CG31029 CG6801 .
VDRC has 3 RNAi stocks for FBgn0036571 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 24 of 4 1.90Up
Head94 ± 14 of 4 1.20Up
Eye114 ± 54 of 4 1.44Up
Thoracicoabdominal ganglion163 ± 24 of 4 2.10Up
Salivary gland187 ± 94 of 4 2.38Up
Crop100 ± 34 of 4 1.30Up
Midgut116 ± 84 of 4 1.50Up
Tubule101 ± 74 of 4 1.30Up
Hindgut100 ± 24 of 4 1.30Up
Heart65 ± 34 of 4 0.83Down
Fat body47 ± 44 of 4 0.61Down
Ovary128 ± 24 of 4 1.60Up
Testis40 ± 14 of 4 0.50Down
Male accessory glands107 ± 54 of 4 1.40Up
Virgin spermatheca51 ± 24 of 4 0.64Down
Mated spermatheca68 ± 34 of 4 0.86None
Adult carcass49 ± 14 of 4 0.60Down
Larval CNS120 ± 54 of 4 1.53Up
Larval Salivary gland113 ± 44 of 4 1.43Up
Larval midgut145 ± 104 of 4 1.84Up
Larval tubule232 ± 54 of 4 2.90Up
Larval hindgut106 ± 44 of 4 1.35Up
Larval fat body554 ± 474 of 4 7.00Up
Larval trachea89 ± 24 of 4 1.13None
Larval carcass64 ± 64 of 4 0.82None
S2 cells (growing)138 ± 34 of 4 1.75Up
Whole fly79 ± 34 of 4

Looking for CG12272-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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