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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12273-RA through 18771 annotations produced 1 hits

angel (angel):

Annotation Number : CG12273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016762
Gbrowse : chr2R:19581520-19582761 (+) // 100.0 //
Probeset : 1625019_at
Accessions : protein= NP_477204;, nucleotide= NM_057856;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0016762.
BDGP gene expression has embryonic in situ data for angel: 4 pix of staining in 1 body parts.
BioGrid reports that CG12273 interacts with CG16718 CG17337 .
TRiP has 1 RNAi stocks for FBgn0016762 available for purchase.
VDRC has 3 RNAi stocks for FBgn0016762 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 04 of 4 1.40Up
Head66 34 of 4 0.80Down
Eye77 24 of 4 0.94None
Thoracicoabdominal ganglion112 34 of 4 1.40Up
Salivary gland156 114 of 4 1.89Up
Crop99 44 of 4 1.20Up
Midgut86 54 of 4 1.00None
Tubule105 24 of 4 1.30Up
Hindgut80 04 of 4 1.00None
Heart48 14 of 4 0.59Down
Fat body45 103 of 4 0.56Down
Ovary120 44 of 4 1.50Up
Testis75 54 of 4 0.90None
Male accessory glands91 54 of 4 1.10None
Virgin spermatheca41 34 of 4 0.50Down
Mated spermatheca43 31 of 4 0.53Down
Adult carcass55 63 of 4 0.70Down
Larval CNS161 134 of 4 1.95Up
Larval Salivary gland117 54 of 4 1.42Up
Larval midgut86 34 of 4 1.05None
Larval tubule123 44 of 4 1.50Up
Larval hindgut105 54 of 4 1.28Up
Larval fat body60 43 of 4 0.70Down
Larval trachea145 134 of 4 1.77Up
Larval carcass105 44 of 4 1.28Up
S2 cells (growing)126 54 of 4 1.54Up
Whole fly82 24 of 4

Looking for CG12273-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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