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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12279-RA through 18771 annotations produced 1 hits



(CG12279):

Annotation Number : CG12279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038080
Gbrowse : chr3R:8530815-8531541 (+) // 100.0 //
Probeset : 1638564_at
Accessions : protein= NP_650227;, nucleotide= NM_141970;
Interpro : 0004792 // thiosulfate sulfurtransferase activity // inferred from electronic annotation /// 0016740 // transferase acti
FlyMine data for FBgn0038080.
VDRC has 1 RNAi stocks for FBgn0038080 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 24 of 4 1.00None
Head182 ± 134 of 4 1.10None
Eye249 ± 104 of 4 1.47Up
Thoracicoabdominal ganglion227 ± 164 of 4 1.30Up
Salivary gland176 ± 44 of 4 1.04None
Crop236 ± 124 of 4 1.40Up
Midgut167 ± 74 of 4 1.00None
Tubule167 ± 54 of 4 1.00None
Hindgut137 ± 34 of 4 0.80None
Heart186 ± 64 of 4 1.10None
Fat body191 ± 334 of 4 1.13None
Ovary218 ± 44 of 4 1.30Up
Testis272 ± 144 of 4 1.60Up
Male accessory glands324 ± 184 of 4 1.90Up
Virgin spermatheca181 ± 104 of 4 1.07None
Mated spermatheca224 ± 84 of 4 1.33Up
Adult carcass151 ± 74 of 4 0.90None
Larval CNS440 ± 364 of 4 2.60Up
Larval Salivary gland370 ± 164 of 4 2.19Up
Larval midgut191 ± 84 of 4 1.13None
Larval tubule256 ± 124 of 4 1.50Up
Larval hindgut173 ± 144 of 4 1.02None
Larval fat body358 ± 234 of 4 2.10Up
Larval trachea382 ± 424 of 4 2.26Up
Larval carcass209 ± 34 of 4 1.24Up
S2 cells (growing)334 ± 114 of 4 1.97Up
Whole fly169 ± 134 of 4

Looking for CG12279-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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