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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12283-RA through 18771 annotations produced 1 hits



Kekkon (kek1):

Annotation Number : CG12283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015399
Gbrowse : chr2L:12818929-12822787 (-) // 100.0 //
Probeset : 1634071_at
Accessions : protein= NP_523559;, nucleotide= NM_078835;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane // tra
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0048408 // epidermal growth factor binding // infe
FlyMine data for FBgn0015399.
Homophila reports that CG12283 is a close match (5e-13) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
BioGrid reports that CG12283 interacts with CG12676 CG17610 CG10079 CG10079 .
VDRC has 4 RNAi stocks for FBgn0015399 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 24 of 411.60Up
Head17 14 of 4 1.80Up
Eye30 34 of 4 3.06Up
Thoracicoabdominal ganglion80 44 of 4 8.20Up
Salivary gland15 42 of 4 1.60None
Crop9 03 of 4 1.00None
Midgut15 30 of 4 1.50None
Tubule10 01 of 4 1.10Up
Hindgut9 21 of 4 1.00None
Heart9 22 of 4 0.94None
Fat body13 24 of 4 1.34None
Ovary7 13 of 4 0.70None
Testis11 14 of 4 1.20None
Male accessory glands25 44 of 4 2.60Up
Virgin spermatheca13 14 of 4 1.38None
Mated spermatheca11 04 of 4 1.18None
Adult carcass16 43 of 4 1.70None
Larval CNS53 14 of 4 5.48Up
Larval Salivary gland13 23 of 4 1.32None
Larval midgut23 14 of 4 2.35Up
Larval tubule8 22 of 4 0.90None
Larval hindgut10 12 of 4 1.11None
Larval fat body20 52 of 4 2.00None
Larval trachea47 74 of 4 4.87Up
Larval carcass22 23 of 4 2.30Up
S2 cells (growing)41 14 of 4 4.21Up
Whole fly9 12 of 4

Looking for CG12283-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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