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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12298-RA through 18771 annotations produced 1 hits



double-or-nothing (sub):

Annotation Number : CG12298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003545
Gbrowse : chr2R:13632999-13635616 (-) // 100.0 //
Probeset : 1633178_at
Accessions : protein= NP_611260;, nucleotide= NM_137416;
Pathway : 0000922 // spindle pole // inferred from mutant phenotype /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from sequ
FlyMine data for FBgn0003545.
Homophila reports that CG12298 is a close match (2e-22) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
BioGrid reports that CG12298 interacts with CG31743 CG7069 CG15631 CG3052 CG7831 CG1763 .
TRiP has 2 RNAi stocks for FBgn0003545 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003545 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50None
Head5 20 of 4 0.80None
Eye5 10 of 4 0.80None
Thoracicoabdominal ganglion3 10 of 4 0.40None
Salivary gland13 40 of 4 1.97None
Crop3 00 of 4 0.50None
Midgut7 10 of 4 1.00None
Tubule6 00 of 4 0.90None
Hindgut4 10 of 4 0.70None
Heart3 10 of 4 0.57None
Fat body5 40 of 4 0.84None
Ovary4 10 of 4 0.60None
Testis7 22 of 4 1.00None
Male accessory glands12 10 of 4 1.80None
Virgin spermatheca2 00 of 4 0.38None
Mated spermatheca2 00 of 4 0.38None
Adult carcass4 10 of 4 0.60None
Larval CNS3 10 of 4 0.44None
Larval Salivary gland2 00 of 4 0.30None
Larval midgut7 30 of 4 1.04None
Larval tubule5 10 of 4 0.70None
Larval hindgut6 10 of 4 0.88None
Larval fat body7 31 of 4 1.00None
Larval trachea4 30 of 4 0.59None
Larval carcass8 20 of 4 1.27None
S2 cells (growing)6 11 of 4 0.94None
Whole fly7 21 of 4

Looking for CG12298-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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