Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12306-RA through 18771 annotations produced 1 hits



polo (polo):

Annotation Number : CG12306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003124
Gbrowse : chr3L:20302752-20306566 (+) // 100.0 //
Probeset : 1636189_at
Accessions : protein= NP_001014592; /// NP_524179;, nucleotide= NM_001014592; /// NM_079455;
Pathway : engulfment // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from mutant phenotype /// 0007052 //
Interpro : 0000776 // kinetochore // inferred from direct assay /// 0000922 // spindle pole // inferred from direct assay /// 00009
FlyMine data for FBgn0003124.
Homophila reports that CG12306 is a close match (7e-11) to human gene FGFR4 (NP_998812), a gene associated with {Cancer progression/metastasis} (3).
BioGrid reports that CG12306 interacts with CG9379 CG2275 CG31361 CG3342 CG3348 CG4893 CG5266 CG33197 CG7838 CG10895 CG2189 .
TRiP has 4 RNAi stocks for FBgn0003124 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.01Down
Crop7 ± 20 of 4 0.00Down
Midgut11 ± 10 of 4 0.00Down
Tubule17 ± 140 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart3 ± 10 of 4 0.01Down
Fat body16 ± 60 of 4 0.03Down
Ovary1260 ± 154 of 4 2.10Up
Testis643 ± 274 of 4 1.00None
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca22 ± 00 of 4 0.04Down
Mated spermatheca14 ± 40 of 4 0.02Down
Adult carcass22 ± 131 of 4 0.00Down
Larval CNS746 ± 214 of 4 1.22Up
Larval Salivary gland18 ± 31 of 4 0.03Down
Larval midgut34 ± 54 of 4 0.06Down
Larval tubule16 ± 10 of 4 0.00Down
Larval hindgut55 ± 44 of 4 0.09Down
Larval fat body147 ± 624 of 4 0.20Down
Larval trachea192 ± 124 of 4 0.31Down
Larval carcass121 ± 144 of 4 0.20Down
S2 cells (growing)771 ± 214 of 4 1.26Up
Whole fly613 ± 84 of 4

Looking for CG12306-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime