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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1231-RA through 18771 annotations produced 1 hits



(CG1231):

Annotation Number : CG1231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035134
Gbrowse : chr3L:356421-357664 (+) // 100.0 //
Probeset : 1638478_at
Accessions : protein= NP_612032;, nucleotide= NM_138188;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035134.
BioGrid reports that CG1231 interacts with CG2128 .
VDRC has 2 RNAi stocks for FBgn0035134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 413.40Up
Head38 44 of 4 4.50Up
Eye19 14 of 4 2.37Up
Thoracicoabdominal ganglion119 34 of 414.20Up
Salivary gland12 40 of 4 1.50None
Crop11 11 of 4 1.40None
Midgut2 00 of 4 0.30None
Tubule9 00 of 4 1.20None
Hindgut8 40 of 4 0.90None
Heart5 10 of 4 0.68None
Fat body20 100 of 4 2.41None
Ovary9 10 of 4 1.10None
Testis2 00 of 4 0.30None
Male accessory glands9 30 of 4 1.10None
Virgin spermatheca9 20 of 4 1.18None
Mated spermatheca10 30 of 4 1.30None
Adult carcass5 10 of 4 0.70None
Larval CNS53 44 of 4 6.39Up
Larval Salivary gland10 30 of 4 1.19None
Larval midgut2 00 of 4 0.28None
Larval tubule7 10 of 4 0.90None
Larval hindgut9 10 of 4 1.17None
Larval fat body6 30 of 4 0.80None
Larval trachea6 11 of 4 0.80None
Larval carcass8 30 of 4 0.98None
S2 cells (growing)4 00 of 4 0.56None
Whole fly8 20 of 4

Looking for CG1231-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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