Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12316-RA through 18771 annotations produced 1 hits


Annotation Number : CG12316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036483
Gbrowse : chr3L:15124610-15130029 (-) // 100.0 //
Probeset : 1627885_s_at
Accessions : protein= NP_648752; /// NP_730030;, nucleotide= NM_140495; /// NM_168611;
FlyMine data for FBgn0036483.
BDGP gene expression has embryonic in situ data for CG12316: 8 pix of staining in 1 body parts.
BioGrid reports that CG12316 interacts with CG4276 .
VDRC has 3 RNAi stocks for FBgn0036483 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 54 of 4 1.20None
Head27 14 of 4 0.30Down
Eye28 24 of 4 0.35Down
Thoracicoabdominal ganglion59 34 of 4 0.70Down
Salivary gland27 72 of 4 0.34Down
Crop36 34 of 4 0.40Down
Midgut28 24 of 4 0.30Down
Tubule35 14 of 4 0.40Down
Hindgut36 24 of 4 0.40Down
Heart20 14 of 4 0.26Down
Fat body13 21 of 4 0.16Down
Ovary200 74 of 4 2.50Up
Testis51 14 of 4 0.60Down
Male accessory glands24 23 of 4 0.30Down
Virgin spermatheca25 14 of 4 0.32Down
Mated spermatheca23 32 of 4 0.30Down
Adult carcass31 23 of 4 0.40Down
Larval CNS81 24 of 4 1.01None
Larval Salivary gland43 14 of 4 0.53Down
Larval midgut17 23 of 4 0.21Down
Larval tubule25 14 of 4 0.30Down
Larval hindgut33 14 of 4 0.42Down
Larval fat body15 31 of 4 0.20Down
Larval trachea59 44 of 4 0.74Down
Larval carcass58 24 of 4 0.72Down
S2 cells (growing)56 14 of 4 0.70Down
Whole fly80 54 of 4

Looking for CG12316-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime