FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12317-RA through 18771 annotations produced 1 hits

JhI-21 (JhI-21):

Annotation Number : CG12317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028425
Gbrowse : chr2L:12051747-12055982 (-) // 100.0 //
Probeset : 1634383_a_at
Accessions : protein= NP_609542; /// NP_723717;, nucleotide= NM_135698; /// NM_164988;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // non-traceable author statement /// 0015171 // amino acid tra
FlyMine data for FBgn0028425.
BDGP gene expression has embryonic in situ data for JhI-21: 4 pix of staining in 1 body parts.
Homophila reports that CG12317 is a close match (8e-86) to human gene CSNU3;SLC7A9 (NP_055085), a gene associated with Cystinuria, type II (3);Cystinuria, type III (3).
TRiP has 1 RNAi stocks for FBgn0028425 available for purchase.
VDRC has 5 RNAi stocks for FBgn0028425 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	162 ± 4	4 of 4	0.50	Down
Head	224 ± 32	4 of 4	0.70	None
Eye	512 ± 94	4 of 4	1.67	None
Thoracicoabdominal ganglion	199 ± 5	4 of 4	0.60	Down
Salivary gland	226 ± 8	4 of 4	0.73	Down
Crop	159 ± 18	4 of 4	0.50	Down
Midgut	97 ± 5	4 of 4	0.30	Down
Tubule	87 ± 21	4 of 4	0.30	Down
Hindgut	64 ± 2	4 of 4	0.20	Down
Heart	65 ± 1	4 of 4	0.21	Down
Fat body	78 ± 15	4 of 4	0.26	Down
Ovary	559 ± 18	4 of 4	1.80	Up
Testis	84 ± 3	4 of 4	0.30	Down
Male accessory glands	379 ± 15	4 of 4	1.20	Up
Virgin spermatheca	147 ± 6	4 of 4	0.48	Down
Mated spermatheca	233 ± 29	4 of 4	0.76	None
Adult carcass	69 ± 5	4 of 4	0.20	Down
Larval CNS	603 ± 44	4 of 4	1.96	Up
Larval Salivary gland	390 ± 15	4 of 4	1.27	Up
Larval midgut	89 ± 4	4 of 4	0.29	Down
Larval tubule	54 ± 4	4 of 4	0.20	Down
Larval hindgut	157 ± 8	4 of 4	0.51	Down
Larval fat body	32 ± 7	4 of 4	0.10	Down
Larval trachea	190 ± 23	4 of 4	0.62	Down
Larval carcass	251 ± 28	4 of 4	0.82	None
S2 cells (growing)	1994 ± 20	4 of 4	6.48	Up
Whole fly	307 ± 17	4 of 4

Looking for CG12317-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720