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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12324-RA through 18771 annotations produced 1 hits



Ribosomal protein S15Aa /// Ribosomal protein S15Ab (RpS15Aa /// RpS15Ab):

Annotation Number : CG12324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010198 /// FBgn0033555
Gbrowse : chr2R:6709175-6709914 (+) // 100.0 // /// chrX:13229823-13231664 (-) // 83.36 //
Probeset : 1640150_s_at
Accessions : protein= NP_001162738; /// NP_524709; /// NP_610616; /// NP_727690; /// NP_727692; /// NP_727693;, nucleotide= NM_001169267; /// NM_079970; /// NM_136772; /// NM_167360; /// NM_167362; /// NM_167363;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0010198 /// FBgn0033555.
BioGrid reports that CG12324 interacts with CG13840 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2460 344 of 4 0.80Down
Head3646 944 of 4 1.20Up
Eye4584 884 of 4 1.45Up
Thoracicoabdominal ganglion3042 544 of 4 1.00None
Salivary gland7971 2224 of 4 2.52Up
Crop4391 1584 of 4 1.40Up
Midgut4118 1194 of 4 1.30Up
Tubule3193 1424 of 4 1.00None
Hindgut4050 334 of 4 1.30Up
Heart5127 2904 of 4 1.62Up
Fat body5292 7064 of 4 1.67Up
Ovary2806 544 of 4 0.90Down
Testis761 114 of 4 0.20Down
Male accessory glands7136 924 of 4 2.30Up
Virgin spermatheca4679 1074 of 4 1.48Up
Mated spermatheca4849 1914 of 4 1.53Up
Adult carcass4377 894 of 4 1.40Up
Larval CNS2486 1314 of 4 0.79Down
Larval Salivary gland6156 1884 of 4 1.95Up
Larval midgut3551 724 of 4 1.12Up
Larval tubule3438 134 of 4 1.10Up
Larval hindgut3783 434 of 4 1.20Up
Larval fat body5068 5594 of 4 1.60Up
Larval trachea4921 1334 of 4 1.56Up
Larval carcass4060 2504 of 4 1.28Up
S2 cells (growing)3804 474 of 4 1.20Up
Whole fly3162 844 of 4

Looking for CG12324-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime