FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12338-RA through 18771 annotations produced 1 hits

(CG12338):

Annotation Number : CG12338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033543
Gbrowse : chr2R:6617079-6618419 (-) // 100.0 //
Probeset : 1641714_at
Accessions : protein= NP_610603;, nucleotide= NM_136759;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003884 // D-amino-acid oxidase activity // inf
FlyMine data for FBgn0033543.
BDGP gene expression has embryonic in situ data for CG12338: 12 pix of staining in 6 body parts.
VDRC has 4 RNAi stocks for FBgn0033543 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	122 ± 3	4 of 4	0.70	None
Head	441 ± 24	4 of 4	2.70	Up
Eye	272 ± 26	4 of 4	1.65	Up
Thoracicoabdominal ganglion	127 ± 6	4 of 4	0.80	None
Salivary gland	358 ± 18	4 of 4	2.17	Up
Crop	77 ± 5	4 of 4	0.50	Down
Midgut	345 ± 16	4 of 4	2.10	Up
Tubule	948 ± 87	4 of 4	5.70	Up
Hindgut	160 ± 4	4 of 4	1.00	None
Heart	547 ± 58	4 of 4	3.31	Up
Fat body	1048 ± 152	4 of 4	6.35	Up
Ovary	26 ± 1	4 of 4	0.20	Down
Testis	16 ± 1	4 of 4	0.10	Down
Male accessory glands	156 ± 14	4 of 4	0.90	None
Virgin spermatheca	1224 ± 24	4 of 4	7.41	Up
Mated spermatheca	789 ± 86	4 of 4	4.78	Up
Adult carcass	529 ± 18	4 of 4	3.20	Up
Larval CNS	58 ± 6	4 of 4	0.35	Down
Larval Salivary gland	109 ± 7	4 of 4	0.66	Down
Larval midgut	581 ± 25	4 of 4	3.52	Up
Larval tubule	830 ± 32	4 of 4	5.00	Up
Larval hindgut	657 ± 117	4 of 4	3.98	Up
Larval fat body	764 ± 145	4 of 4	4.60	Up
Larval trachea	46 ± 8	4 of 4	0.28	Down
Larval carcass	21 ± 0	4 of 4	0.13	Down
S2 cells (growing)	54 ± 2	4 of 4	0.33	Down
Whole fly	165 ± 16	4 of 4

Looking for CG12338-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720