FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1234-RA through 18771 annotations produced 1 hits

(CG1234):

Annotation Number : CG1234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037489
Gbrowse : chr3R:3069895-3072689 (-) // 100.0 //
Probeset : 1639632_at
Accessions : protein= NP_649710;, nucleotide= NM_141453;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0037489.
BDGP gene expression has embryonic in situ data for CG1234: 12 pix of staining in 15 body parts.
BioGrid reports that CG1234 interacts with CG5359 .
TRiP has 1 RNAi stocks for FBgn0037489 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037489 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	64 ± 2	4 of 4	0.40	Down
Head	70 ± 3	4 of 4	0.40	Down
Eye	45 ± 4	4 of 4	0.27	Down
Thoracicoabdominal ganglion	60 ± 2	4 of 4	0.40	Down
Salivary gland	103 ± 4	4 of 4	0.60	Down
Crop	101 ± 3	4 of 4	0.60	Down
Midgut	89 ± 4	4 of 4	0.50	Down
Tubule	86 ± 10	4 of 4	0.50	Down
Hindgut	72 ± 0	4 of 4	0.40	Down
Heart	52 ± 5	4 of 4	0.31	Down
Fat body	86 ± 8	4 of 4	0.51	Down
Ovary	311 ± 4	4 of 4	1.80	Up
Testis	95 ± 2	4 of 4	0.60	Down
Male accessory glands	212 ± 8	4 of 4	1.20	Up
Virgin spermatheca	69 ± 3	4 of 4	0.40	Down
Mated spermatheca	94 ± 5	4 of 4	0.55	Down
Adult carcass	61 ± 4	4 of 4	0.40	Down
Larval CNS	230 ± 7	4 of 4	1.34	Up
Larval Salivary gland	148 ± 13	4 of 4	0.87	None
Larval midgut	61 ± 5	4 of 4	0.36	Down
Larval tubule	44 ± 4	4 of 4	0.30	Down
Larval hindgut	115 ± 16	4 of 4	0.68	Down
Larval fat body	51 ± 5	4 of 4	0.30	Down
Larval trachea	157 ± 26	4 of 4	0.92	None
Larval carcass	114 ± 28	4 of 4	0.67	None
S2 cells (growing)	162 ± 4	4 of 4	0.95	None
Whole fly	171 ± 8	4 of 4

Looking for CG1234-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720