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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12341-RA through 18771 annotations produced 1 hits



(CG12341):

Annotation Number : CG12341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033550
Gbrowse : chr2R:6699620-6700835 (-) // 100.0 //
Probeset : 1623499_at
Accessions : protein= NP_610612;, nucleotide= NM_136768;
FlyMine data for FBgn0033550.
BDGP gene expression has embryonic in situ data for CG12341: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0033550 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 44 of 4 1.20None
Head61 ± 44 of 4 1.10None
Eye118 ± 54 of 4 2.03Up
Thoracicoabdominal ganglion90 ± 34 of 4 1.50Up
Salivary gland144 ± 94 of 4 2.49Up
Crop96 ± 24 of 4 1.70Up
Midgut68 ± 24 of 4 1.20None
Tubule102 ± 14 of 4 1.80Up
Hindgut68 ± 24 of 4 1.20None
Heart53 ± 24 of 4 0.91None
Fat body42 ± 34 of 4 0.74Down
Ovary105 ± 44 of 4 1.80Up
Testis38 ± 34 of 4 0.70Down
Male accessory glands134 ± 34 of 4 2.30Up
Virgin spermatheca95 ± 74 of 4 1.64Up
Mated spermatheca97 ± 34 of 4 1.68Up
Adult carcass60 ± 34 of 4 1.00None
Larval CNS67 ± 34 of 4 1.16None
Larval Salivary gland107 ± 64 of 4 1.85Up
Larval midgut85 ± 44 of 4 1.47Up
Larval tubule138 ± 24 of 4 2.40Up
Larval hindgut67 ± 44 of 4 1.15None
Larval fat body119 ± 94 of 4 2.00Up
Larval trachea42 ± 44 of 4 0.73Down
Larval carcass44 ± 24 of 4 0.76Down
S2 cells (growing)77 ± 24 of 4 1.34Up
Whole fly58 ± 34 of 4

Looking for CG12341-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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