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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12343-RA through 18771 annotations produced 1 hits



(CG12343):

Annotation Number : CG12343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033556
Gbrowse : chr2R:6710087-6710768 (-) // 100.0 //
Probeset : 1634281_at
Accessions : protein= NP_610617;, nucleotide= NM_136773;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000838
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from sequence
FlyMine data for FBgn0033556.
VDRC has 3 RNAi stocks for FBgn0033556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 14 of 4 1.20Up
Head213 94 of 4 1.10None
Eye370 74 of 4 1.92Up
Thoracicoabdominal ganglion182 34 of 4 0.90None
Salivary gland188 114 of 4 0.98None
Crop352 74 of 4 1.80Up
Midgut157 44 of 4 0.80Down
Tubule326 104 of 4 1.70Up
Hindgut198 44 of 4 1.00None
Heart202 74 of 4 1.05None
Fat body139 164 of 4 0.73Down
Ovary283 74 of 4 1.50Up
Testis321 134 of 4 1.70Up
Male accessory glands207 124 of 4 1.10None
Virgin spermatheca312 144 of 4 1.62Up
Mated spermatheca324 144 of 4 1.68Up
Adult carcass174 114 of 4 0.90None
Larval CNS230 94 of 4 1.20Up
Larval Salivary gland127 74 of 4 0.66Down
Larval midgut89 34 of 4 0.46Down
Larval tubule325 104 of 4 1.70Up
Larval hindgut136 54 of 4 0.71Down
Larval fat body198 144 of 4 1.00None
Larval trachea283 334 of 4 1.47Up
Larval carcass108 44 of 4 0.56Down
S2 cells (growing)200 64 of 4 1.04None
Whole fly192 74 of 4

Looking for CG12343-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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