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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12346-RA through 18771 annotations produced 1 hits



cag (cag):

Annotation Number : CG12346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017414
Gbrowse : chr2R:6780538-6781865 (-) // 99.14 //
Probeset : 1641342_at
Accessions : protein= NP_477207;, nucleotide= NM_057859;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation"
FlyMine data for FBgn0017414.
BDGP gene expression has embryonic in situ data for cag: 4 pix of staining in 1 body parts.
BioGrid reports that CG12346 interacts with CG12346 .
VDRC has 4 RNAi stocks for FBgn0017414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 44 of 4 1.70Up
Head93 34 of 4 1.20Up
Eye97 34 of 4 1.29Up
Thoracicoabdominal ganglion131 64 of 4 1.70Up
Salivary gland113 64 of 4 1.51Up
Crop107 34 of 4 1.40Up
Midgut43 23 of 4 0.60Down
Tubule45 24 of 4 0.60Down
Hindgut69 34 of 4 0.90None
Heart94 24 of 4 1.25Up
Fat body83 194 of 4 1.11None
Ovary120 24 of 4 1.60Up
Testis94 34 of 4 1.20Up
Male accessory glands65 23 of 4 0.90Down
Virgin spermatheca92 24 of 4 1.22Up
Mated spermatheca111 84 of 4 1.48Up
Adult carcass69 84 of 4 0.90None
Larval CNS120 74 of 4 1.60Up
Larval Salivary gland90 44 of 4 1.20Up
Larval midgut59 34 of 4 0.79Down
Larval tubule59 24 of 4 0.80Down
Larval hindgut67 34 of 4 0.90None
Larval fat body115 64 of 4 1.50Up
Larval trachea136 94 of 4 1.80Up
Larval carcass83 14 of 4 1.11Up
S2 cells (growing)116 24 of 4 1.55Up
Whole fly75 14 of 4

Looking for CG12346-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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