Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1236-RA through 18771 annotations produced 1 hits



/// (CG1236 /// DsimCG1236):

Annotation Number : CG1236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037370
Gbrowse : chr3R:1562465-1563996 (+) // 100.0 //
Probeset : 1631755_at
Accessions : protein= NP_649579;, nucleotide= NM_141322;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004617 // phosphoglycerate dehydrogenase acti
FlyMine data for FBgn0037370.
BDGP gene expression has embryonic in situ data for CG1236: 15 pix of staining in 6 body parts.
Homophila reports that CG1236 is a close match (1e-20) to human gene PHGDH (NP_006614), a gene associated with Phosphoglycerate dehydrogenase deficiency, 601815 (3).
VDRC has 3 RNAi stocks for FBgn0037370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 14 of 4 0.40Down
Head59 ± 54 of 4 0.60Down
Eye59 ± 44 of 4 0.60Down
Thoracicoabdominal ganglion51 ± 34 of 4 0.50Down
Salivary gland149 ± 34 of 4 1.49Up
Crop152 ± 84 of 4 1.50Up
Midgut41 ± 24 of 4 0.40Down
Tubule116 ± 34 of 4 1.20Up
Hindgut74 ± 24 of 4 0.70Down
Heart74 ± 34 of 4 0.74Down
Fat body82 ± 44 of 4 0.82Down
Ovary200 ± 24 of 4 2.00Up
Testis50 ± 44 of 4 0.50Down
Male accessory glands186 ± 64 of 4 1.90Up
Virgin spermatheca143 ± 64 of 4 1.42Up
Mated spermatheca146 ± 64 of 4 1.46Up
Adult carcass80 ± 94 of 4 0.80None
Larval CNS91 ± 44 of 4 0.91None
Larval Salivary gland287 ± 204 of 4 2.86Up
Larval midgut41 ± 44 of 4 0.41Down
Larval tubule120 ± 54 of 4 1.20Up
Larval hindgut131 ± 44 of 4 1.31Up
Larval fat body2262 ± 2254 of 422.50Up
Larval trachea129 ± 194 of 4 1.29Up
Larval carcass100 ± 54 of 4 1.00None
S2 cells (growing)85 ± 14 of 4 0.85Down
Whole fly100 ± 44 of 4

Looking for CG1236-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime