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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12362-RB through 18771 annotations produced 1 hits


(CG12362):

Annotation Number : CG12362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036082
Gbrowse : chr3L:10405915-10407877 (+) // 100.0 //
Probeset : 1635753_s_at
Accessions : protein= NP_648392; /// NP_729606;, nucleotide= NM_140135; /// NM_168405;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0036082.
BDGP gene expression has embryonic in situ data for CG12362: 4 pix of staining in 1 body parts.
Homophila reports that CG12362 is a close match (1e-13) to human gene LPRS2;PARK2;PDJ;PRKN (NP_054643), a gene associated with Adenocarcinoma of lung, somatic, 211980 (3);Adenocarcinoma, ovarian, somatic, 604370 (3);Parkinson disease, juvenile, type 2, 600116 (3);{Leprosy, susceptibility to}, 607572 (3).
BioGrid reports that CG12362 interacts with CG15218 CG5788 CG8004 CG1391 CG1487 CG17050 CG7001 CG9277 .
VDRC has 2 RNAi stocks for FBgn0036082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.08Down
Crop4 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body6 ± 30 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis1189 ± 44 of 411.00Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.04Down
Mated spermatheca9 ± 10 of 4 0.08Down
Adult carcass7 ± 30 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland5 ± 20 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body103 ± 534 of 4 1.00None
Larval trachea6 ± 81 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly108 ± 144 of 4

Looking for CG12362-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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