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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12363-RA through 18771 annotations produced 1 hits



dynein light chain; tctex-1 (Dlc90F):

Annotation Number : CG12363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024432
Gbrowse : chr3R:14124926-14125764 (+) // 100.0 //
Probeset : 1627017_at
Accessions : protein= NP_477356;, nucleotide= NM_058008;
Pathway : 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred
Interpro : "0003774 // motor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0024432.
BioGrid reports that CG12363 interacts with CG13929 CG18734 CG3000 CG31145 CG4190 CG5359 CG5545 CG6720 CG12813 CG13022 CG13312 CG14025 CG15112 CG16786 CG2210 CG2267 CG30497 CG31122 CG3400 CG4463 CG5565 CG5581 CG6178 CG7208 CG32581 CG8974 .
VDRC has 2 RNAi stocks for FBgn0024432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain617 ± 104 of 4 1.00None
Head541 ± 124 of 4 0.90Down
Eye952 ± 294 of 4 1.53Up
Thoracicoabdominal ganglion779 ± 94 of 4 1.30Up
Salivary gland604 ± 144 of 4 0.97None
Crop696 ± 194 of 4 1.10Up
Midgut755 ± 44 of 4 1.20Up
Tubule611 ± 204 of 4 1.00None
Hindgut639 ± 154 of 4 1.00None
Heart621 ± 104 of 4 1.00None
Fat body263 ± 184 of 4 0.42Down
Ovary1046 ± 324 of 4 1.70Up
Testis1123 ± 504 of 4 1.80Up
Male accessory glands858 ± 154 of 4 1.40Up
Virgin spermatheca317 ± 124 of 4 0.51Down
Mated spermatheca373 ± 244 of 4 0.60Down
Adult carcass345 ± 204 of 4 0.60Down
Larval CNS952 ± 584 of 4 1.53Up
Larval Salivary gland1039 ± 474 of 4 1.67Up
Larval midgut1157 ± 504 of 4 1.86Up
Larval tubule966 ± 234 of 4 1.60Up
Larval hindgut914 ± 194 of 4 1.47Up
Larval fat body558 ± 404 of 4 0.90None
Larval trachea1116 ± 304 of 4 1.79Up
Larval carcass779 ± 254 of 4 1.25Up
S2 cells (growing)1744 ± 474 of 4 2.80Up
Whole fly623 ± 84 of 4

Looking for CG12363-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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